Thermostat Algorithms for Molecular Dynamics Simulations
From molecular dynamics to hydrodynamics: A novel Galilean invariant thermostat: The Journal of Chemical Physics: Vol 122, No 11
Anomalous effects of velocity rescaling algorithms: the flying ice cube effect revisited arXiv:1805.02295v2 [physics.comp-ph]
PDF) On The Berendsen Thermostat
JMSE | Free Full-Text | Effect of Depth-Induced Breaking on Wind Wave Simulations in Shallow Nearshore Waters off Northern Taiwan during the Passage of Two Super Typhoons
Nanomaterials | Free Full-Text | Revisiting the Rate-Dependent Mechanical Response of Typical Silicon Structures via Molecular Dynamics
Anomalous effects of velocity rescaling algorithms: the flying ice cube effect revisited arXiv:1805.02295v2 [physics.comp-ph]
From molecular dynamics to hydrodynamics: A novel Galilean invariant thermostat: The Journal of Chemical Physics: Vol 122, No 11
On the effect of the thermostat in non-equilibrium molecular dynamics simulations | SpringerLink
Complex reaction processes in combustion unraveled by neural network-based molecular dynamics simulation | Nature Communications
PDF) A New Algorithm for Contact Angle Estimation in Molecular Dynamics | Sumith Yesudasan - Academia.edu
Identical to Fig. 11, except the Berendsen thermostat was used with a... | Download Scientific Diagram
Removing Thermostat Distortions of Protein Dynamics in Constant-Temperature Molecular Dynamics Simulations | Journal of Chemical Theory and Computation
On the Temperature and Pressure Dependence of a Range of Properties of a Type of Water Model Commonly Used in High-Temperature Protein Unfolding Simulations: Biophysical Journal
Anomalous effects of velocity rescaling algorithms: the flying ice cube effect revisited arXiv:1805.02295v2 [physics.comp-ph]
Molecular Dynamics at Constant Temperature | Qijing Zheng
Molecular Dynamics at Constant Temperature | Qijing Zheng
Canonical sampling through velocity rescaling
Berendsen Thermostat - an overview | ScienceDirect Topics
Citations of Berendsen et al. 8 and Bussi et al. 9 over time. Data... | Download Scientific Diagram
Molecular dynamics: thermostats & barostats
EMPIRE: a highly parallel semiempirical molecular orbital program: 3: Born-Oppenheimer molecular dynamics | SpringerLink
Full article: Molecular dynamics simulations on aqueous solution confined in charged nanochannels: asymmetric effect of surface charge
Effects of Temperature Control Algorithms on Transport Properties and Kinetics in Molecular Dynamics Simulations | Journal of Chemical Theory and Computation
Detecting reactions from MD trajectories: ChemTraYzer2 — Tutorials 2022.1 documentation
The 'hidden side' of spin labeled oligonucleotides: Molecular Dynamics study focusing on the EPR-silent components of base pairing | bioRxiv
